Variant report

Variant	rs1463514
Chromosome Location	chr3:159571712-159571713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13070254	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1461103	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1675497	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1965998	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2126143	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2169303	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2886623	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs33050	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs33054	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs33056	1.00[JPT][hapmap]
rs3851360	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3863075	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3889311	0.81[EUR][1000 genomes]
rs3911714	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4513503	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4680520	0.81[EUR][1000 genomes]
rs4680527	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441274	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6441275	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6788052	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6802934	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7625089	0.81[EUR][1000 genomes]
rs7636819	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9820045	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159558000-159575000	Weak transcription	Gastric	stomach
2	chr3:159567600-159572200	Weak transcription	Ovary	ovary
3	chr3:159568800-159576800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:159569000-159573000	Enhancers	Fetal Brain Male	brain
5	chr3:159569000-159573200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:159569200-159571800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:159569200-159573000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:159569400-159572800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:159569600-159571800	Enhancers	Fetal Lung	lung
10	chr3:159569600-159577800	Weak transcription	Colonic Mucosa	Colon
11	chr3:159569600-159578400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:159570000-159572600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr3:159570200-159572400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:159570200-159572600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr3:159570200-159575200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:159570200-159576800	Active TSS	Right Ventricle	heart
17	chr3:159570400-159572000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:159570400-159573000	Active TSS	Aorta	Aorta
19	chr3:159570400-159573200	Flanking Active TSS	HUVEC	blood vessel
20	chr3:159570600-159573400	Active TSS	Psoas Muscle	Psoas
21	chr3:159570800-159574800	Weak transcription	Thymus	Thymus
22	chr3:159570800-159576000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:159570800-159578000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr3:159571000-159571800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:159571000-159571800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:159571000-159571800	Enhancers	NHLF	lung
27	chr3:159571000-159572200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:159571000-159572200	Weak transcription	Hela-S3	cervix
29	chr3:159571000-159572800	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr3:159571000-159573000	Active TSS	Left Ventricle	heart
31	chr3:159571000-159573800	Weak transcription	Lung	lung
32	chr3:159571000-159574800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:159571000-159577800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:159571200-159571800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:159571200-159571800	Enhancers	Adipose Nuclei	Adipose
36	chr3:159571200-159571800	Enhancers	Fetal Kidney	kidney
37	chr3:159571200-159571800	Enhancers	HMEC	breast
38	chr3:159571200-159571800	Enhancers	NH-A	brain
39	chr3:159571200-159572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:159571200-159572200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:159571200-159572200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:159571200-159572200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr3:159571200-159572200	Active TSS	Fetal Muscle Leg	muscle
44	chr3:159571200-159572200	Weak transcription	Placenta	Placenta
45	chr3:159571200-159572200	Active TSS	Fetal Stomach	stomach
46	chr3:159571200-159572200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:159571200-159572200	Enhancers	Rectal Smooth Muscle	rectum
48	chr3:159571200-159572200	Weak transcription	GM12878-XiMat	blood
49	chr3:159571200-159572400	Enhancers	Fetal Intestine Large	intestine
50	chr3:159571200-159572400	Active TSS	Skeletal Muscle Female	skeletal muscle

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