Variant report

Variant	rs13070254
Chromosome Location	chr3:159485268-159485269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1461103	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463514	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1675497	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1965998	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126143	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169303	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886623	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33050	1.00[JPT][hapmap]
rs33054	1.00[JPT][hapmap]
rs33056	1.00[JPT][hapmap]
rs3851360	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3863075	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889311	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911714	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513503	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680520	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680527	0.82[EUR][1000 genomes]
rs6441272	0.88[YRI][hapmap]
rs6441274	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441275	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788052	0.81[EUR][1000 genomes]
rs6805556	0.88[EUR][1000 genomes]
rs7625089	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636819	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820045	0.82[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159480600-159485400	Active TSS	Aorta	Aorta
2	chr3:159481000-159485400	Active TSS	Brain Hippocampus Middle	brain
3	chr3:159481000-159485400	Active TSS	Right Ventricle	heart
4	chr3:159483600-159493000	Weak transcription	Gastric	stomach
5	chr3:159483800-159485400	Flanking Active TSS	HUVEC	blood vessel
6	chr3:159483800-159485800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr3:159483800-159488000	Weak transcription	Spleen	Spleen
8	chr3:159483800-159493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:159484000-159488200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
11	chr3:159484200-159485400	Flanking Active TSS	NHDF-Ad	bronchial
12	chr3:159484200-159486400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:159484200-159493200	Weak transcription	Lung	lung
14	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:159484400-159485600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:159484400-159485600	Active TSS	Fetal Brain Female	brain
17	chr3:159484400-159486800	Enhancers	Fetal Heart	heart
18	chr3:159484400-159488000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:159484400-159493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:159484400-159493000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:159484400-159493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:159484400-159493200	Weak transcription	Fetal Stomach	stomach
23	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:159484600-159485400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:159484600-159485400	Enhancers	Adipose Nuclei	Adipose
26	chr3:159484600-159485400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr3:159484600-159485600	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr3:159484600-159487200	Weak transcription	Fetal Intestine Large	intestine
29	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
30	chr3:159484800-159485400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:159484800-159485600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:159484800-159485600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:159484800-159488400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:159484800-159489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:159484800-159493000	Weak transcription	HSMMtube	muscle
36	chr3:159485000-159485400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:159485000-159485400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:159485000-159485400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr3:159485000-159485400	Weak transcription	Left Ventricle	heart
40	chr3:159485000-159485600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr3:159485000-159485600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:159485000-159485600	Enhancers	HMEC	breast
43	chr3:159485000-159485800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:159485000-159485800	Genic enhancers	HSMM	muscle
45	chr3:159485000-159485800	Enhancers	Osteobl	bone
46	chr3:159485000-159486200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:159485000-159486800	Enhancers	Brain Substantia Nigra	brain
48	chr3:159485000-159486800	Enhancers	Rectal Smooth Muscle	rectum
49	chr3:159485000-159486800	Strong transcription	NHEK	skin
50	chr3:159485000-159488200	Weak transcription	Brain Anterior Caudate	brain

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