Variant report

Variant	rs9820045
Chromosome Location	chr3:159568546-159568547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:159568337-159568610	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159568526..159570707-chr3:159572408..159575068,2	MCF-7	breast:
2	chr3:159564767..159567021-chr3:159567735..159569460,2	MCF-7	breast:

Variant related genes	Relation type
SCHIP1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13070254	0.82[EUR][1000 genomes]
rs1461103	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1463514	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675497	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1965998	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2126143	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2169303	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2886623	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs33050	0.81[EUR][1000 genomes]
rs3851360	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3863075	0.82[EUR][1000 genomes]
rs3889311	0.82[EUR][1000 genomes]
rs3911714	0.82[EUR][1000 genomes]
rs4513503	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4680520	0.82[EUR][1000 genomes]
rs4680527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441274	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6441275	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6788052	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6802934	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7625089	0.82[EUR][1000 genomes]
rs7636819	0.82[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
3	chr3:159558000-159575000	Weak transcription	Gastric	stomach
4	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:159560400-159569200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:159561800-159570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:159561800-159570400	Enhancers	Colon Smooth Muscle	Colon
10	chr3:159562400-159570400	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:159562600-159569400	Enhancers	Brain Angular Gyrus	brain
12	chr3:159562800-159570000	Weak transcription	Adipose Nuclei	Adipose
13	chr3:159563000-159569000	Weak transcription	Fetal Brain Male	brain
14	chr3:159563000-159569600	Weak transcription	Small Intestine	intestine
15	chr3:159563000-159570600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:159563200-159569400	Enhancers	Brain Anterior Caudate	brain
17	chr3:159563800-159569200	Weak transcription	NH-A	brain
18	chr3:159563800-159569400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:159563800-159570400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:159563800-159570400	Weak transcription	Aorta	Aorta
22	chr3:159563800-159570800	Weak transcription	Esophagus	oesophagus
23	chr3:159564000-159569000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:159564000-159569800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:159564200-159569000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:159564200-159569400	Weak transcription	Fetal Brain Female	brain
27	chr3:159564400-159568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:159564400-159569000	Weak transcription	Liver	Liver
29	chr3:159564400-159569200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:159564400-159569400	Weak transcription	NHEK	skin
31	chr3:159565200-159569400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:159565400-159568800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:159565400-159569200	Weak transcription	HMEC	breast
34	chr3:159565600-159569200	Weak transcription	NHDF-Ad	bronchial
35	chr3:159565800-159570400	Enhancers	Fetal Heart	heart
36	chr3:159566000-159569000	Weak transcription	Fetal Kidney	kidney
37	chr3:159566000-159570400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:159566200-159568800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:159566200-159569000	Weak transcription	HSMM	muscle
40	chr3:159566200-159569600	Weak transcription	HSMMtube	muscle
41	chr3:159566200-159570000	Weak transcription	Fetal Intestine Small	intestine
42	chr3:159566200-159570800	Weak transcription	Spleen	Spleen
43	chr3:159566400-159568600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:159566600-159569400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:159566800-159568800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:159566800-159568800	Weak transcription	Right Atrium	heart
47	chr3:159567000-159569400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:159567000-159569600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:159567200-159570400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr3:159567400-159570600	Weak transcription	Lung	lung

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