Variant report

Variant	rs6788052
Chromosome Location	chr3:159561337-159561338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159560375..159562588-chr3:159564406..159567889,4	K562	blood:
2	chr3:159561088..159563606-chr3:159564406..159566329,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13070254	0.81[EUR][1000 genomes]
rs1461103	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1463514	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1675497	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1965998	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2126143	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2169303	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2886623	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3851360	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3863075	0.81[EUR][1000 genomes]
rs3889311	0.81[EUR][1000 genomes]
rs3911714	0.81[EUR][1000 genomes]
rs4513503	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4680520	0.81[EUR][1000 genomes]
rs4680527	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6441274	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441275	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6802934	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6805556	0.83[AMR][1000 genomes]
rs7625089	0.81[EUR][1000 genomes]
rs7636819	0.81[EUR][1000 genomes]
rs9820045	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
2	chr3:159555200-159561600	Weak transcription	NHLF	lung
3	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:159556000-159561800	Weak transcription	NHDF-Ad	bronchial
5	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:159556200-159563400	Weak transcription	NHEK	skin
7	chr3:159557600-159561600	Weak transcription	Osteobl	bone
8	chr3:159557800-159561600	Weak transcription	HUVEC	blood vessel
9	chr3:159558000-159562600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:159558000-159568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:159558000-159570800	Weak transcription	Pancreas	Pancrea
12	chr3:159558000-159575000	Weak transcription	Gastric	stomach
13	chr3:159558200-159561800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:159558200-159561800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:159558200-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:159558200-159562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:159558200-159562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:159558200-159562800	Weak transcription	Lung	lung
19	chr3:159558200-159565800	Weak transcription	Spleen	Spleen
20	chr3:159558400-159561600	Weak transcription	HSMMtube	muscle
21	chr3:159558400-159562600	Weak transcription	Right Ventricle	heart
22	chr3:159558400-159562800	Weak transcription	Left Ventricle	heart
23	chr3:159558400-159562800	Weak transcription	Psoas Muscle	Psoas
24	chr3:159558600-159561800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:159558600-159566000	Weak transcription	Right Atrium	heart
26	chr3:159558800-159570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:159559000-159561800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:159559000-159561800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:159559000-159561800	Weak transcription	HSMM	muscle
30	chr3:159559000-159561800	Weak transcription	NH-A	brain
31	chr3:159559000-159562400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:159559000-159569400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:159559000-159570600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:159559200-159561800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:159559200-159561800	Weak transcription	Adipose Nuclei	Adipose
36	chr3:159559200-159561800	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:159559200-159561800	Weak transcription	Fetal Stomach	stomach
38	chr3:159559400-159561600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:159559400-159561800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr3:159559400-159561800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:159559400-159561800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:159559400-159561800	Weak transcription	Fetal Kidney	kidney
43	chr3:159559400-159562200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:159559600-159563600	Weak transcription	A549	lung
45	chr3:159559800-159561600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:159559800-159561800	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:159559800-159564000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:159560000-159561600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:159560000-159561800	Weak transcription	HMEC	breast
50	chr3:159560000-159565200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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