Variant report

Variant	rs6802934
Chromosome Location	chr3:159556462-159556463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1461103	0.85[AMR][1000 genomes]
rs1463514	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1675497	0.84[AMR][1000 genomes]
rs1965998	0.90[AMR][1000 genomes]
rs2126143	0.84[AMR][1000 genomes]
rs2169303	0.82[AMR][1000 genomes]
rs2886623	0.85[AMR][1000 genomes]
rs3851360	0.83[AMR][1000 genomes]
rs4513503	0.83[AMR][1000 genomes]
rs4680527	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441274	0.83[AMR][1000 genomes]
rs6441275	0.83[AMR][1000 genomes]
rs6788052	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9820045	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
2	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
3	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
5	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
6	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
10	chr3:159553200-159557400	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:159554000-159557200	Enhancers	Brain Angular Gyrus	brain
12	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:159554000-159557400	Enhancers	Brain Hippocampus Middle	brain
15	chr3:159554000-159557400	Enhancers	Brain Substantia Nigra	brain
16	chr3:159554200-159557000	Enhancers	Brain Anterior Caudate	brain
17	chr3:159554600-159557200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:159555000-159557800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:159555000-159558000	Weak transcription	A549	lung
20	chr3:159555200-159561600	Weak transcription	NHLF	lung
21	chr3:159555400-159557400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:159555400-159557600	Weak transcription	Placenta	Placenta
23	chr3:159555400-159557800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:159555600-159557200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:159555800-159556600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:159555800-159556800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:159555800-159556800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:159555800-159556800	Weak transcription	Small Intestine	intestine
30	chr3:159555800-159557000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:159555800-159557000	Weak transcription	Osteobl	bone
32	chr3:159555800-159557200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:159555800-159557200	Weak transcription	NH-A	brain
34	chr3:159555800-159557400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:159555800-159557400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:159555800-159557400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:159555800-159557400	Weak transcription	Adipose Nuclei	Adipose
38	chr3:159555800-159557600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:159555800-159557600	Weak transcription	Lung	lung
40	chr3:159555800-159557800	Weak transcription	Fetal Heart	heart
41	chr3:159555800-159557800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:159556000-159556800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:159556000-159556800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:159556000-159556800	Weak transcription	Fetal Stomach	stomach
45	chr3:159556000-159557000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:159556000-159557000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:159556000-159557200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:159556000-159557400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:159556000-159557400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:159556000-159557400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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