Variant report

Variant	rs1675497
Chromosome Location	chr3:159582382-159582383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159575817..159579356-chr3:159581555..159584258,3	MCF-7	breast:
2	chr17:57925518..57927077-chr3:159581643..159584059,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11919032	1.00[CHD][hapmap]
rs13070254	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1461103	0.89[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1463514	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1965998	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2126143	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2169303	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs26298	0.82[ASW][hapmap]
rs2886623	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes]
rs33050	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs33054	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs33056	0.81[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3851360	0.84[AMR][1000 genomes]
rs3863075	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs3911714	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4513503	0.85[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs4680527	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6441274	0.84[AMR][1000 genomes]
rs6441275	0.85[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs6441276	1.00[ASW][hapmap]
rs6788052	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6802934	0.84[AMR][1000 genomes]
rs7636819	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs9820045	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159572000-159582800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:159572400-159589400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:159573400-159582600	Enhancers	Fetal Brain Male	brain
4	chr3:159574000-159582800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:159574200-159582800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:159574800-159584800	Enhancers	Brain Angular Gyrus	brain
7	chr3:159574800-159586200	Weak transcription	Ovary	ovary
8	chr3:159576800-159584200	Enhancers	Fetal Heart	heart
9	chr3:159577800-159584800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:159578000-159583000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:159578200-159585600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:159578600-159585200	Weak transcription	Fetal Intestine Large	intestine
13	chr3:159579200-159582600	Weak transcription	Fetal Stomach	stomach
14	chr3:159579200-159584200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:159579400-159582800	Weak transcription	Lung	lung
16	chr3:159579400-159583000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:159579400-159583200	Weak transcription	Brain Germinal Matrix	brain
18	chr3:159579400-159584200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:159579400-159587400	Weak transcription	Fetal Intestine Small	intestine
20	chr3:159579400-159589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:159579400-159589600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:159579600-159582400	Weak transcription	Aorta	Aorta
23	chr3:159579600-159582600	Weak transcription	Osteobl	bone
24	chr3:159579600-159583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:159579600-159584800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:159579600-159589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:159579600-159589600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:159579600-159589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:159579600-159599200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:159579600-159600600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:159579800-159582600	Weak transcription	Right Atrium	heart
32	chr3:159579800-159582600	Weak transcription	NH-A	brain
33	chr3:159579800-159582800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:159579800-159583200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:159579800-159585200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:159579800-159588600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:159580000-159582400	Weak transcription	HSMM	muscle
38	chr3:159580000-159582400	Weak transcription	HSMMtube	muscle
39	chr3:159580000-159590200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:159580200-159582400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:159580200-159582400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:159580200-159582400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:159580200-159582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:159580200-159584800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:159580200-159585600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr3:159580200-159587800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:159580200-159589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:159580200-159589400	Weak transcription	NHEK	skin
49	chr3:159580200-159597600	Weak transcription	Spleen	Spleen
50	chr3:159580400-159582400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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