Variant report

Variant	rs9866650
Chromosome Location	chr3:159359849-159359850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513539	1.00[GIH][hapmap];0.87[AMR][1000 genomes]
rs10513542	0.83[EUR][1000 genomes]
rs11919032	1.00[GIH][hapmap]
rs12106686	0.87[AMR][1000 genomes]
rs16830532	1.00[GIH][hapmap];0.87[AMR][1000 genomes]
rs16830533	0.87[AMR][1000 genomes]
rs28366645	0.83[EUR][1000 genomes]
rs28715518	1.00[EUR][1000 genomes]
rs6789368	1.00[GIH][hapmap];0.83[EUR][1000 genomes]
rs73012294	0.83[EUR][1000 genomes]
rs73014170	0.83[EUR][1000 genomes]
rs750688	1.00[GIH][hapmap]
rs7630289	1.00[GIH][hapmap]
rs9851213	1.00[EUR][1000 genomes]
rs9860189	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356200-159363200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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