Variant report

Variant	rs16830532
Chromosome Location	chr3:159336334-159336335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10513539	0.91[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10513542	0.86[EUR][1000 genomes]
rs10513543	1.00[EUR][1000 genomes]
rs11919028	1.00[EUR][1000 genomes]
rs11919032	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12106686	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107648	1.00[TSI][hapmap]
rs1356925	1.00[TSI][hapmap]
rs1437520	1.00[TSI][hapmap]
rs16830487	1.00[TSI][hapmap]
rs16830533	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16830633	1.00[TSI][hapmap]
rs28366645	0.86[EUR][1000 genomes]
rs3930053	1.00[TSI][hapmap]
rs6789368	1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs73012276	1.00[EUR][1000 genomes]
rs73012277	1.00[EUR][1000 genomes]
rs73012294	0.86[EUR][1000 genomes]
rs73012298	1.00[EUR][1000 genomes]
rs73012300	1.00[EUR][1000 genomes]
rs73014103	1.00[EUR][1000 genomes]
rs73014170	0.86[EUR][1000 genomes]
rs750688	1.00[GIH][hapmap]
rs7619259	1.00[TSI][hapmap]
rs7629269	1.00[TSI][hapmap]
rs7630289	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7653224	1.00[TSI][hapmap]
rs9290045	1.00[TSI][hapmap]
rs979774	1.00[EUR][1000 genomes]
rs9821757	1.00[EUR][1000 genomes]
rs9822265	1.00[EUR][1000 genomes]
rs9824363	1.00[TSI][hapmap]
rs9826238	1.00[EUR][1000 genomes]
rs9829229	0.83[TSI][hapmap]
rs9831125	0.83[TSI][hapmap]
rs9859402	1.00[EUR][1000 genomes]
rs9866095	1.00[TSI][hapmap]
rs9866650	1.00[GIH][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159328000-159336400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:159335400-159336400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:159335400-159336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:159335400-159336600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:159335600-159336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:159335600-159336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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