Variant report

Variant	rs16830487
Chromosome Location	chr3:159304536-159304537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:158984413..158985174-chr3:159304068..159304978,3	MCF-7	breast:
2	chr3:159039956..159040769-chr3:159304062..159305002,3	MCF-7	breast:
3	chr3:158998387..158998907-chr3:159304112..159304962,2	MCF-7	breast:
4	chr3:158981261..158982254-chr3:159304162..159305156,6	MCF-7	breast:
5	chr3:158984325..158985283-chr3:159303605..159305136,6	MCF-7	breast:
6	chr3:159039627..159040946-chr3:159304062..159304967,4	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10154893	1.00[CEU][hapmap]
rs10513539	1.00[TSI][hapmap]
rs11919032	1.00[TSI][hapmap]
rs12107648	1.00[TSI][hapmap]
rs1356925	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs1356926	1.00[CEU][hapmap]
rs1437520	1.00[TSI][hapmap]
rs1550218	1.00[CEU][hapmap]
rs16830484	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16830507	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16830510	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16830532	1.00[TSI][hapmap]
rs16830633	1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1976819	1.00[CEU][hapmap]
rs1978831	1.00[CEU][hapmap]
rs1980254	0.82[EUR][1000 genomes]
rs2118321	1.00[CEU][hapmap]
rs3930053	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs59412427	0.82[EUR][1000 genomes]
rs59556163	0.85[EUR][1000 genomes]
rs61036525	0.82[EUR][1000 genomes]
rs6769217	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6796636	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs73012280	0.92[EUR][1000 genomes]
rs73012283	0.92[EUR][1000 genomes]
rs7619259	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7625882	1.00[CEU][hapmap]
rs7629269	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7630289	1.00[TSI][hapmap]
rs7636120	1.00[CEU][hapmap]
rs7650974	1.00[CEU][hapmap]
rs7653224	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs9290045	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9817830	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9818110	0.82[EUR][1000 genomes]
rs9823562	0.82[EUR][1000 genomes]
rs9824363	1.00[TSI][hapmap]
rs9829229	1.00[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs9831125	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs9832443	0.82[EUR][1000 genomes]
rs9833614	1.00[CEU][hapmap]
rs9833762	1.00[CEU][hapmap]
rs9840484	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9852770	0.82[EUR][1000 genomes]
rs9860690	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9864641	0.82[EUR][1000 genomes]
rs9866095	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs9881499	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9882993	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159303800-159304800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:159304000-159304800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:159304000-159304800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:159304200-159304600	Enhancers	Brain Germinal Matrix	brain
5	chr3:159304200-159304800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:159304200-159304800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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