Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10154893	1.00[CEU][hapmap]
rs1356925	1.00[CEU][hapmap]
rs1356926	1.00[CEU][hapmap]
rs16830484	1.00[CEU][hapmap]
rs16830487	1.00[CEU][hapmap]
rs16830507	1.00[CEU][hapmap]
rs16830510	1.00[CEU][hapmap]
rs17806535	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1976819	1.00[CEU][hapmap]
rs1978831	1.00[CEU][hapmap]
rs2118321	1.00[CEU][hapmap]
rs2886622	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3930053	1.00[CEU][hapmap]
rs6769217	1.00[CEU][hapmap]
rs6796636	1.00[CEU][hapmap]
rs7434227	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7619259	1.00[CEU][hapmap]
rs7625882	1.00[CEU][hapmap]
rs7629269	1.00[CEU][hapmap]
rs7636120	1.00[CEU][hapmap]
rs7638815	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7650974	1.00[CEU][hapmap]
rs7653224	1.00[CEU][hapmap]
rs9290045	1.00[CEU][hapmap]
rs9817830	1.00[CEU][hapmap]
rs9829229	1.00[CEU][hapmap]
rs9833614	1.00[CEU][hapmap]
rs9833762	1.00[CEU][hapmap]
rs9840484	1.00[CEU][hapmap]
rs9860690	1.00[CEU][hapmap]
rs9866095	1.00[CEU][hapmap]
rs9881499	1.00[CEU][hapmap]
rs9882993	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159339200-159350200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159340200-159345400	Weak transcription	Fetal Heart	heart
3	chr3:159340200-159347400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:159342800-159350000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:159343000-159349200	Weak transcription	NHEK	skin
6	chr3:159343200-159350200	Weak transcription	HMEC	breast
7	chr3:159344400-159346000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:159344600-159346200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:159344600-159348000	Enhancers	A549	lung
10	chr3:159344600-159350400	Weak transcription	HSMMtube	muscle
11	chr3:159344800-159347200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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