Variant report

Variant	rs17806535
Chromosome Location	chr3:159363924-159363925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1550218	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2886622	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7434227	1.00[AMR][1000 genomes]
rs7638815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159362800-159365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:159363000-159364400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:159363000-159364400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:159363000-159364600	Enhancers	NHDF-Ad	bronchial
6	chr3:159363200-159364400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:159363200-159364400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159363200-159364400	Enhancers	NHLF	lung
9	chr3:159363200-159364400	Enhancers	Osteobl	bone
10	chr3:159363400-159364200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:159363400-159364200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:159363400-159364400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:159363800-159364200	Enhancers	HSMM	muscle
14	chr3:159363800-159364200	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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