Variant report

Variant	rs7638815
Chromosome Location	chr3:159366032-159366033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1550218	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16830633	1.00[CEU][hapmap]
rs17806535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2886622	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6767038	1.00[CEU][hapmap]
rs7434227	1.00[AMR][1000 genomes]
rs7620654	1.00[CEU][hapmap]
rs9821936	1.00[CEU][hapmap]
rs9826416	1.00[CEU][hapmap]
rs9831125	1.00[CEU][hapmap]
rs9857497	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159364600-159368600	Weak transcription	NHDF-Ad	bronchial
3	chr3:159366000-159366200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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