Variant report
| Variant | rs9821936 |
|---|---|
| Chromosome Location | chr3:159380161-159380162 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1356925 | 0.84[EUR][1000 genomes] |
| rs16830484 | 0.84[EUR][1000 genomes] |
| rs16830510 | 0.81[EUR][1000 genomes] |
| rs1962890 | 0.91[EUR][1000 genomes] |
| rs1980254 | 0.84[EUR][1000 genomes] |
| rs59412427 | 0.84[EUR][1000 genomes] |
| rs61036525 | 0.84[EUR][1000 genomes] |
| rs6768439 | 0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6769217 | 0.84[EUR][1000 genomes] |
| rs6796636 | 0.84[EUR][1000 genomes] |
| rs7619259 | 0.84[EUR][1000 genomes] |
| rs7629269 | 0.84[EUR][1000 genomes] |
| rs7638815 | 1.00[CEU][hapmap] |
| rs7653224 | 0.84[EUR][1000 genomes] |
| rs9290045 | 0.81[EUR][1000 genomes] |
| rs9817830 | 0.84[EUR][1000 genomes] |
| rs9818110 | 0.84[EUR][1000 genomes] |
| rs9823562 | 0.84[EUR][1000 genomes] |
| rs9825694 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9826416 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9829229 | 0.84[EUR][1000 genomes] |
| rs9831125 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9832443 | 0.84[EUR][1000 genomes] |
| rs9840484 | 0.84[EUR][1000 genomes] |
| rs9845025 | 0.83[YRI][hapmap] |
| rs9852770 | 0.84[EUR][1000 genomes] |
| rs9857497 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9860690 | 0.84[EUR][1000 genomes] |
| rs9863199 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9864641 | 0.84[EUR][1000 genomes] |
| rs9866095 | 0.84[EUR][1000 genomes] |
| rs9871188 | 0.81[EUR][1000 genomes] |
| rs9881499 | 0.84[EUR][1000 genomes] |
| rs9882993 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159377400-159383200 | Weak transcription | Left Ventricle | heart |
| 2 | chr3:159379800-159380200 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
