Variant report

Variant	rs7620654
Chromosome Location	chr3:159384795-159384796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1004091	1.00[CHB][hapmap]
rs16830633	1.00[CEU][hapmap]
rs57319340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57755169	1.00[ASN][1000 genomes]
rs6768439	1.00[CHB][hapmap]
rs7638815	1.00[CEU][hapmap]
rs9826416	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9831125	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9857497	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159380200-159386800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:159383200-159387200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:159383600-159385200	Weak transcription	Left Ventricle	heart
4	chr3:159383800-159395000	Weak transcription	Right Atrium	heart
5	chr3:159384600-159385400	Enhancers	Right Ventricle	heart
6	chr3:159384600-159385400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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