Variant report

Variant	rs16830633
Chromosome Location	chr3:159377312-159377313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10513539	1.00[TSI][hapmap]
rs10513543	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11919032	1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12107648	1.00[TSI][hapmap]
rs1356925	1.00[TSI][hapmap]
rs1437520	1.00[TSI][hapmap]
rs16830487	1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs16830507	0.92[EUR][1000 genomes]
rs16830532	1.00[TSI][hapmap]
rs3930053	1.00[TSI][hapmap]
rs6768439	1.00[CEU][hapmap]
rs73012276	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73012277	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73012280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012298	0.80[AMR][1000 genomes]
rs73012300	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73014103	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7619259	1.00[TSI][hapmap]
rs7620654	1.00[CEU][hapmap]
rs7629269	1.00[TSI][hapmap]
rs7630289	1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7638815	1.00[CEU][hapmap]
rs7653224	1.00[TSI][hapmap]
rs9290045	1.00[TSI][hapmap]
rs979774	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9821757	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9822265	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9824363	1.00[TSI][hapmap]
rs9826238	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9826416	1.00[CEU][hapmap]
rs9829229	0.83[TSI][hapmap]
rs9831125	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs9857497	1.00[CEU][hapmap]
rs9859402	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9866095	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159377200-159377400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links