Variant report

Variant	rs73012283
Chromosome Location	chr3:159379995-159379996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513543	0.80[AMR][1000 genomes]
rs11919032	0.80[AMR][1000 genomes]
rs16830487	0.92[EUR][1000 genomes]
rs16830507	0.92[EUR][1000 genomes]
rs16830633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012276	0.80[AMR][1000 genomes]
rs73012277	0.80[AMR][1000 genomes]
rs73012280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012298	0.80[AMR][1000 genomes]
rs73012300	0.90[AMR][1000 genomes]
rs73014103	0.80[AMR][1000 genomes]
rs7630289	0.80[AMR][1000 genomes]
rs979774	0.80[AMR][1000 genomes]
rs9821757	0.80[AMR][1000 genomes]
rs9822265	0.80[AMR][1000 genomes]
rs9826238	0.80[AMR][1000 genomes]
rs9859402	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159377400-159383200	Weak transcription	Left Ventricle	heart
2	chr3:159379800-159380200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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