Variant report

Variant	rs16830507
Chromosome Location	chr3:159322169-159322170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10154893	1.00[CEU][hapmap]
rs1356925	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1356926	1.00[CEU][hapmap]
rs1550218	1.00[CEU][hapmap]
rs16830484	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16830487	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16830510	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16830633	0.92[EUR][1000 genomes]
rs1976819	1.00[CEU][hapmap]
rs1978831	1.00[CEU][hapmap]
rs1980254	0.82[EUR][1000 genomes]
rs2118321	1.00[CEU][hapmap]
rs3930053	1.00[CEU][hapmap]
rs59412427	0.82[EUR][1000 genomes]
rs59556163	0.85[EUR][1000 genomes]
rs61036525	0.82[EUR][1000 genomes]
rs6769217	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6796636	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs73012280	0.92[EUR][1000 genomes]
rs73012283	0.92[EUR][1000 genomes]
rs7619259	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7625882	1.00[CEU][hapmap]
rs7629269	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7636120	1.00[CEU][hapmap]
rs7650974	1.00[CEU][hapmap]
rs7653224	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9290045	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9817830	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9818110	0.82[EUR][1000 genomes]
rs9823562	0.82[EUR][1000 genomes]
rs9829229	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9832443	0.82[EUR][1000 genomes]
rs9833614	1.00[CEU][hapmap]
rs9833762	1.00[CEU][hapmap]
rs9840484	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9852770	0.82[EUR][1000 genomes]
rs9860690	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9864641	0.82[EUR][1000 genomes]
rs9866095	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9881499	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9882993	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159321200-159322800	Enhancers	NHDF-Ad	bronchial
2	chr3:159321600-159322400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:159321600-159322600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:159321600-159322600	Enhancers	Osteobl	bone
5	chr3:159321600-159323400	Enhancers	Fetal Heart	heart
6	chr3:159321800-159322400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:159321800-159322600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:159322000-159322400	Enhancers	Adipose Nuclei	Adipose
9	chr3:159322000-159322400	Enhancers	NH-A	brain
10	chr3:159322000-159322600	Enhancers	NHLF	lung

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