Variant report

Variant	rs7434227
Chromosome Location	chr3:159345654-159345655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1550218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17806535	1.00[AMR][1000 genomes]
rs2886622	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7638815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159339200-159350200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159340200-159347400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:159342800-159350000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:159343000-159349200	Weak transcription	NHEK	skin
5	chr3:159343200-159350200	Weak transcription	HMEC	breast
6	chr3:159344400-159346000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:159344600-159346200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:159344600-159348000	Enhancers	A549	lung
9	chr3:159344600-159350400	Weak transcription	HSMMtube	muscle
10	chr3:159344800-159347200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:159345400-159346000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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