Variant report

Variant	rs57792208
Chromosome Location	chr10:45410080-45410081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45409743..45410263-chr10:88136586..88137362,2	MCF-7	breast:
2	chr10:45409366..45410933-chr10:45414161..45416346,2	K562	blood:
3	chr10:45402937..45405855-chr10:45407880..45411438,3	K562	blood:

Variant related genes	Relation type
ENSG00000234504	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11239300	1.00[EUR][1000 genomes]
rs11815349	1.00[EUR][1000 genomes]
rs11816338	1.00[EUR][1000 genomes]
rs12243502	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12246173	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12249378	1.00[EUR][1000 genomes]
rs12250724	1.00[EUR][1000 genomes]
rs12251910	1.00[EUR][1000 genomes]
rs56413731	1.00[EUR][1000 genomes]
rs7085359	1.00[EUR][1000 genomes]
rs7095998	1.00[EUR][1000 genomes]
rs73275092	1.00[EUR][1000 genomes]
rs73287594	1.00[EUR][1000 genomes]
rs74128124	1.00[EUR][1000 genomes]
rs7899617	1.00[EUR][1000 genomes]
rs7900196	1.00[EUR][1000 genomes]
rs7903078	1.00[EUR][1000 genomes]
rs7903359	1.00[EUR][1000 genomes]
rs7924266	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45401400-45415600	Weak transcription	Fetal Brain Female	brain
2	chr10:45401600-45410200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:45406400-45419000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:45407200-45411600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:45407600-45411400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:45407800-45422800	Weak transcription	Ovary	ovary
7	chr10:45408200-45410200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr10:45408200-45410200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:45408200-45410400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:45408200-45410400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:45408600-45410200	Flanking Active TSS	Dnd41	blood
12	chr10:45408600-45417200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:45408800-45410200	Enhancers	Gastric	stomach
14	chr10:45408800-45410200	Enhancers	Spleen	Spleen
15	chr10:45409200-45411000	Enhancers	Primary B cells from cord blood	blood
16	chr10:45409400-45410200	Enhancers	K562	blood
17	chr10:45409400-45410400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:45409400-45411000	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:45409400-45411400	Enhancers	Fetal Thymus	thymus
20	chr10:45409600-45410400	Enhancers	Fetal Heart	heart
21	chr10:45409600-45410600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:45409600-45410600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:45409600-45411000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:45409600-45411200	Weak transcription	Fetal Kidney	kidney
25	chr10:45409600-45411800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr10:45409600-45412800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:45409800-45410400	Enhancers	Primary T cells from cord blood	blood
28	chr10:45409800-45412600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:45410000-45410200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:45410000-45410200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr10:45410000-45410600	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:45410000-45411000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:45410000-45411400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr10:45410000-45412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:45410000-45419000	Weak transcription	Pancreas	Pancrea

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