Variant report

Variant	rs74128124
Chromosome Location	chr10:45487063-45487064
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45478290..45480310-chr10:45486867..45489135,2	MCF-7	breast:
2	chr10:45472874..45476114-chr10:45485945..45489321,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107551	Chromatin interaction
ENSG00000165507	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11239300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815349	1.00[EUR][1000 genomes]
rs11816338	1.00[EUR][1000 genomes]
rs12249378	1.00[EUR][1000 genomes]
rs12250724	1.00[EUR][1000 genomes]
rs12251910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56413731	1.00[EUR][1000 genomes]
rs57792208	1.00[EUR][1000 genomes]
rs7085359	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7095998	1.00[EUR][1000 genomes]
rs73275092	1.00[EUR][1000 genomes]
rs73287594	1.00[EUR][1000 genomes]
rs74131512	1.00[EUR][1000 genomes]
rs74131513	1.00[EUR][1000 genomes]
rs74131518	1.00[EUR][1000 genomes]
rs7898705	1.00[EUR][1000 genomes]
rs7899617	1.00[EUR][1000 genomes]
rs7900196	1.00[EUR][1000 genomes]
rs7903078	1.00[EUR][1000 genomes]
rs7903359	1.00[EUR][1000 genomes]
rs7924266	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45474400-45490800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr10:45474400-45490800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:45474800-45490200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:45476800-45487400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:45476800-45491400	Weak transcription	Fetal Kidney	kidney
6	chr10:45477400-45487400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:45477800-45488200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:45477800-45489400	Strong transcription	Duodenum Mucosa	Duodenum
9	chr10:45478200-45487600	Weak transcription	Psoas Muscle	Psoas
10	chr10:45478400-45489000	Weak transcription	NHDF-Ad	bronchial
11	chr10:45478800-45489200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:45478800-45495800	Weak transcription	HMEC	breast
13	chr10:45480800-45487400	Weak transcription	Gastric	stomach
14	chr10:45480800-45489400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:45481200-45489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:45482000-45488400	Strong transcription	HSMMtube	muscle
17	chr10:45482000-45489200	Weak transcription	HUVEC	blood vessel
18	chr10:45482200-45490800	Weak transcription	GM12878-XiMat	blood
19	chr10:45482200-45491200	Weak transcription	Fetal Lung	lung
20	chr10:45482400-45495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:45482600-45488800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:45482800-45489000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:45483200-45487600	Weak transcription	Aorta	Aorta
24	chr10:45483400-45488800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:45484000-45487800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr10:45484000-45488200	Strong transcription	Spleen	Spleen
27	chr10:45484000-45489200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:45484000-45490400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:45484000-45491000	Genic enhancers	Left Ventricle	heart
30	chr10:45484200-45488000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:45484200-45494200	Enhancers	Right Atrium	heart
32	chr10:45484400-45487400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr10:45484400-45490800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr10:45484600-45488000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:45484600-45488200	Genic enhancers	Brain Angular Gyrus	brain
36	chr10:45484600-45490000	Genic enhancers	Right Ventricle	heart
37	chr10:45484600-45494200	Enhancers	Ovary	ovary
38	chr10:45484800-45490000	Genic enhancers	Pancreas	Pancrea
39	chr10:45484800-45491000	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr10:45485200-45487200	Enhancers	Fetal Heart	heart
41	chr10:45485200-45487400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:45485200-45487400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:45485200-45487400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:45485200-45487400	Weak transcription	HSMM	muscle
45	chr10:45485200-45487800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr10:45485200-45487800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:45485200-45490000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:45485200-45493600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:45485400-45487200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:45485400-45487800	Enhancers	Placenta	Placenta

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