Variant report

Variant	rs73287594
Chromosome Location	chr10:45577406-45577407
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11239300	1.00[EUR][1000 genomes]
rs11816338	1.00[EUR][1000 genomes]
rs12249378	1.00[EUR][1000 genomes]
rs12250724	1.00[EUR][1000 genomes]
rs12251910	1.00[EUR][1000 genomes]
rs56413731	1.00[EUR][1000 genomes]
rs57792208	1.00[EUR][1000 genomes]
rs7085359	1.00[EUR][1000 genomes]
rs7095998	1.00[EUR][1000 genomes]
rs74128124	1.00[EUR][1000 genomes]
rs74131512	1.00[EUR][1000 genomes]
rs74131513	1.00[EUR][1000 genomes]
rs74131518	1.00[EUR][1000 genomes]
rs74131519	1.00[EUR][1000 genomes]
rs7898705	1.00[EUR][1000 genomes]
rs7899617	1.00[EUR][1000 genomes]
rs7924266	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45576400-45577600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:45576800-45577600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:45577000-45577600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:45577400-45577600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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