Variant report
| Variant | rs74131513 |
|---|---|
| Chromosome Location | chr10:45642656-45642657 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ATF1 | chr10:45642562-45642802 | K562 | blood: | n/a | n/a |
| 2 | MYC | chr10:45642612-45642811 | K562 | blood: | n/a | n/a |
| 3 | TEAD4 | chr10:45642423-45642827 | K562 | blood: | n/a | n/a |
| 4 | ARID3A | chr10:45642652-45642789 | K562 | blood: | n/a | n/a |
| 5 | MAX | chr10:45642592-45642692 | K562 | blood: | n/a | n/a |
| 6 | CEBPB | chr10:45642577-45642841 | K562 | blood: | n/a | n/a |
| 7 | TAL1 | chr10:45642493-45642804 | K562 | blood: | n/a | n/a |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C10orf25-2 | chr10:45642510-45642669 | NONHSAT013063 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243349 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11239300 | 1.00[EUR][1000 genomes] |
| rs12250724 | 1.00[EUR][1000 genomes] |
| rs12251910 | 1.00[EUR][1000 genomes] |
| rs56413731 | 1.00[EUR][1000 genomes] |
| rs7085359 | 1.00[EUR][1000 genomes] |
| rs73287594 | 1.00[EUR][1000 genomes] |
| rs74128124 | 1.00[EUR][1000 genomes] |
| rs74131512 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74131518 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74131519 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7898705 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7899617 | 1.00[EUR][1000 genomes] |
| rs7924266 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831848 | chr10:45490176-45667670 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2750897 | chr10:45550145-45820136 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv947903 | chr10:45598715-45657182 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv895104 | chr10:45636867-45715369 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv895105 | chr10:45636867-45928822 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45641200-45643000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 2 | chr10:45642600-45643200 | Enhancers | K562 | blood |
