Variant report

Variant	rs57806408
Chromosome Location	chr15:60429790-60429791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56756160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58573828	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973920	1.00[AMR][1000 genomes]
rs59297074	1.00[AMR][1000 genomes]
rs59568962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60051753	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433293	1.00[AMR][1000 genomes]
rs73433298	1.00[AMR][1000 genomes]
rs74016950	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60426800-60430000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:60427000-60430000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:60427000-60435000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:60428600-60430000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:60428600-60431200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:60428800-60429800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:60428800-60430600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:60429200-60430200	Enhancers	Brain Substantia Nigra	brain
9	chr15:60429200-60430800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr15:60429200-60431000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:60429200-60431000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:60429200-60431200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:60429600-60430600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:60429600-60431200	Enhancers	HSMM	muscle
15	chr15:60429600-60431200	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links