Variant report

Variant	rs60051753
Chromosome Location	chr15:60456240-60456241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56756160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472277	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57806408	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58573828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59297074	1.00[AMR][1000 genomes]
rs59568962	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433211	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433256	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016950	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016976	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60454400-60464800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links