Variant report

Variant	rs58573828
Chromosome Location	chr15:60444498-60444499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56756160	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57806408	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58973920	1.00[AMR][1000 genomes]
rs58980750	0.80[AFR][1000 genomes]
rs59297074	1.00[AMR][1000 genomes]
rs59568962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60051753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433270	0.80[AFR][1000 genomes]
rs73433293	1.00[AMR][1000 genomes]
rs73433298	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60430600-60447200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:60442000-60445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:60442000-60446600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:60442000-60447400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:60442800-60446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:60442800-60446800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:60442800-60447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:60443000-60446400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:60443000-60446800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:60443000-60447200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:60443200-60445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:60444000-60445600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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