Variant report

Variant	rs73433270
Chromosome Location	chr15:60447299-60447300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57472277	0.80[AFR][1000 genomes]
rs58573828	0.80[AFR][1000 genomes]
rs58879692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58980750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59568962	0.80[AFR][1000 genomes]
rs60855487	0.83[AMR][1000 genomes]
rs61040250	0.80[AFR][1000 genomes]
rs61170295	1.00[AMR][1000 genomes]
rs73433211	0.80[AFR][1000 genomes]
rs73433256	0.80[AFR][1000 genomes]
rs73433281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433287	1.00[AMR][1000 genomes]
rs74016950	0.80[AFR][1000 genomes]
rs74016976	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60442000-60447400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:60442800-60447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60445600-60449400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:60445800-60448000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:60445800-60448000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr15:60446400-60447800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:60446400-60448000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:60446400-60452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:60446600-60447800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr15:60446600-60448400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:60446800-60447600	Enhancers	NH-A	brain
12	chr15:60446800-60448200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:60446800-60448200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:60447000-60447400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:60447000-60448000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:60447000-60448400	Enhancers	HSMM	muscle
17	chr15:60447200-60447400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:60447200-60447800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:60447200-60447800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:60447200-60447800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr15:60447200-60447800	Bivalent Enhancer	GM12878-XiMat	blood
22	chr15:60447200-60447800	Enhancers	HSMMtube	muscle
23	chr15:60447200-60447800	Enhancers	NHDF-Ad	bronchial
24	chr15:60447200-60448000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr15:60447200-60448000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:60447200-60448000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:60447200-60448200	Enhancers	H1 Cell Line	embryonic stem cell

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