Variant report

Variant	rs58980750
Chromosome Location	chr15:60447930-60447931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57472277	0.80[AFR][1000 genomes]
rs58573828	0.80[AFR][1000 genomes]
rs58879692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59568962	0.80[AFR][1000 genomes]
rs60855487	0.83[AMR][1000 genomes]
rs61040250	0.80[AFR][1000 genomes]
rs61170295	1.00[AMR][1000 genomes]
rs73433211	0.80[AFR][1000 genomes]
rs73433256	0.80[AFR][1000 genomes]
rs73433270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433287	1.00[AMR][1000 genomes]
rs74016950	0.80[AFR][1000 genomes]
rs74016976	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60445600-60449400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:60445800-60448000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:60445800-60448000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:60446400-60448000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:60446400-60452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:60446600-60448400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:60446800-60448200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:60446800-60448200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:60447000-60448000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:60447000-60448400	Enhancers	HSMM	muscle
11	chr15:60447200-60448000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr15:60447200-60448000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:60447200-60448000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:60447200-60448200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:60447400-60448000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:60447400-60448200	Enhancers	NHEK	skin
17	chr15:60447400-60448400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:60447400-60448600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:60447600-60448000	Enhancers	Placenta	Placenta
20	chr15:60447600-60448000	Flanking Active TSS	NH-A	brain
21	chr15:60447600-60448200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr15:60447600-60448200	Enhancers	HMEC	breast
23	chr15:60447600-60448400	Enhancers	Osteobl	bone
24	chr15:60447800-60448000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr15:60447800-60448000	Flanking Active TSS	NHDF-Ad	bronchial
26	chr15:60447800-60448200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:60447800-60448200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
28	chr15:60447800-60448400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:60447800-60452000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:60447800-60453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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