Variant report

Variant	rs57813446
Chromosome Location	chr4:173884717-173884718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17059038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059041	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059052	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059068	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059073	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615626	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572852	0.92[EUR][1000 genomes]
rs57965890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002071	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870318	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870323	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870330	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870331	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870332	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870333	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173883200-173885000	Enhancers	Fetal Stomach	stomach
2	chr4:173883200-173885000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:173883800-173885000	Enhancers	Duodenum Mucosa	Duodenum
4	chr4:173883800-173885000	Enhancers	Psoas Muscle	Psoas
5	chr4:173883800-173885200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:173883800-173886000	Enhancers	K562	blood
7	chr4:173884000-173884800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr4:173884000-173885000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:173884000-173885000	Enhancers	Colonic Mucosa	Colon
10	chr4:173884000-173885000	Enhancers	Stomach Mucosa	stomach
11	chr4:173884000-173885400	Enhancers	Colon Smooth Muscle	Colon
12	chr4:173884200-173884800	Enhancers	Small Intestine	intestine
13	chr4:173884200-173884800	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr4:173884400-173884800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:173884400-173884800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr4:173884400-173884800	Enhancers	Hela-S3	cervix
17	chr4:173884400-173885000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
18	chr4:173884400-173885000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
19	chr4:173884600-173884800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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