Variant report

Variant	rs73002071
Chromosome Location	chr4:173857982-173857983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17059038	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059041	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059052	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059062	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059068	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059073	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615626	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572852	0.84[EUR][1000 genomes]
rs57813446	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57965890	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870323	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870330	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870331	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870332	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870333	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173853800-173872400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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