Variant report

Variant	rs73870332
Chromosome Location	chr4:173914128-173914129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17059038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059062	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615626	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572852	0.92[EUR][1000 genomes]
rs57813446	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57965890	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002071	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870318	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73870333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:173907800-173917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:173910200-173916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:173910400-173920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:173912000-173919600	Weak transcription	HUVEC	blood vessel
7	chr4:173912200-173915400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:173912600-173914800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:173912800-173915000	Enhancers	Fetal Intestine Small	intestine
10	chr4:173913200-173915000	Enhancers	A549	lung
11	chr4:173913200-173915400	Enhancers	Fetal Intestine Large	intestine
12	chr4:173913200-173917400	Enhancers	Hela-S3	cervix
13	chr4:173913800-173914200	Flanking Active TSS	K562	blood
14	chr4:173913800-173914600	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:173913800-173914600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:173914000-173914400	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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