The 2.0 version of rSNPBase

Variant report

Variant rs57823986
Chromosome Location chr1:114497759-114497760
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114473600-114499200 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:114479000-114517600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:114484000-114510400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:114484000-114510400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:114484000-114511200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:114484200-114497800 Weak transcription NHDF-Ad bronchial
7 chr1:114484200-114499400 Weak transcription Brain Germinal Matrix brain
8 chr1:114484200-114499600 Weak transcription HMEC breast
9 chr1:114484200-114504800 Weak transcription Esophagus oesophagus
10 chr1:114484200-114505600 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:114484400-114510400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:114485000-114500600 Weak transcription Lung lung
13 chr1:114485000-114510400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:114486400-114499800 Weak transcription Fetal Brain Male brain
15 chr1:114487800-114498800 Weak transcription Left Ventricle heart
16 chr1:114487800-114499200 Weak transcription Ovary ovary
17 chr1:114488200-114499000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:114489600-114499800 Weak transcription Fetal Brain Female brain
19 chr1:114489600-114505800 Weak transcription Gastric stomach
20 chr1:114489800-114510400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:114490000-114499400 Weak transcription NHLF lung
22 chr1:114490000-114500600 Weak transcription Pancreas Pancrea
23 chr1:114490000-114505600 Weak transcription Aorta Aorta
24 chr1:114490200-114499200 Weak transcription H1 Cell Line embryonic stem cell
25 chr1:114490200-114507200 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr1:114490200-114510800 Weak transcription A549 lung
27 chr1:114490400-114497800 Weak transcription NH-A brain
28 chr1:114490400-114499200 Weak transcription Stomach Mucosa stomach
29 chr1:114490400-114505000 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:114490600-114499200 Weak transcription Brain Anterior Caudate brain
31 chr1:114490600-114499400 Weak transcription Right Ventricle heart
32 chr1:114490600-114499400 Weak transcription Small Intestine intestine
33 chr1:114490600-114512000 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr1:114490800-114499200 Weak transcription Brain Angular Gyrus brain
35 chr1:114491000-114499000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:114491000-114499200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:114491000-114499200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:114491800-114498000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr1:114491800-114499200 Weak transcription HUVEC blood vessel
40 chr1:114491800-114499400 Weak transcription Colonic Mucosa Colon
41 chr1:114491800-114500600 Weak transcription Psoas Muscle Psoas
42 chr1:114491800-114500600 Weak transcription Spleen Spleen
43 chr1:114492200-114498000 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:114492200-114498200 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr1:114492200-114501000 Weak transcription Fetal Heart heart
46 chr1:114492800-114497800 Weak transcription Stomach Smooth Muscle stomach
47 chr1:114492800-114499200 Weak transcription Brain Substantia Nigra brain
48 chr1:114492800-114518600 Strong transcription Dnd41 blood
49 chr1:114493400-114517600 Strong transcription Fetal Thymus thymus
50 chr1:114494600-114498800 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015