Variant report

Variant	rs6690665
Chromosome Location	chr1:114613692-114613693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11102717	1.00[AMR][1000 genomes]
rs11102718	1.00[AMR][1000 genomes]
rs11102723	1.00[AMR][1000 genomes]
rs12060342	1.00[AMR][1000 genomes]
rs12060704	1.00[AMR][1000 genomes]
rs12061788	1.00[AMR][1000 genomes]
rs12062241	1.00[AMR][1000 genomes]
rs12076115	1.00[AMR][1000 genomes]
rs12079394	1.00[AMR][1000 genomes]
rs12085980	1.00[AMR][1000 genomes]
rs12087525	1.00[AMR][1000 genomes]
rs12087807	1.00[AMR][1000 genomes]
rs12091375	1.00[AMR][1000 genomes]
rs12094896	1.00[AMR][1000 genomes]
rs57823986	1.00[AMR][1000 genomes]
rs58203825	1.00[AMR][1000 genomes]
rs60420764	1.00[AMR][1000 genomes]
rs60727700	1.00[AMR][1000 genomes]
rs74112072	1.00[AMR][1000 genomes]
rs74112073	1.00[AMR][1000 genomes]
rs74112550	1.00[AMR][1000 genomes]
rs74112551	1.00[AMR][1000 genomes]
rs74112552	1.00[AMR][1000 genomes]
rs74112553	1.00[AMR][1000 genomes]
rs74113350	1.00[AMR][1000 genomes]
rs7515723	1.00[AMR][1000 genomes]
rs7527367	1.00[AMR][1000 genomes]
rs7529237	1.00[AMR][1000 genomes]
rs7529814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1849780	chr1:114577463-114663164	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv463284	chr1:114585590-114623867	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv547568	chr1:114585590-114623867	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv547569	chr1:114587766-114625425	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114597200-114614600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:114611000-114614200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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