Variant report

Variant	rs57839197
Chromosome Location	chr9:117774867-117774868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:117768614..117770126-chr9:117773255..117775130,2	K562	blood:
2	chr9:117770232..117771827-chr9:117773416..117775820,2	K562	blood:
3	chr9:117660650..117663296-chr9:117774626..117776386,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73656709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656710	1.00[AMR][1000 genomes]
rs73656711	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656712	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117768400-117776000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:117769800-117775800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:117771200-117783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:117771400-117776200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:117771400-117778600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:117771400-117784600	Weak transcription	HMEC	breast
7	chr9:117771600-117776000	Weak transcription	Hela-S3	cervix
8	chr9:117771800-117779000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:117772600-117775800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:117773000-117776000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:117773400-117803200	Weak transcription	Esophagus	oesophagus
12	chr9:117773600-117776000	Weak transcription	Fetal Lung	lung
13	chr9:117773600-117787200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:117773800-117775200	Weak transcription	Dnd41	blood
15	chr9:117773800-117776600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:117774200-117775200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:117774200-117775800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:117774200-117776200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:117774400-117780400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:117774600-117775000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:117774800-117775000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:117774800-117783200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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