Variant report

Variant	rs73656712
Chromosome Location	chr9:117758965-117758966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57839197	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656713	0.89[AFR][1000 genomes]
rs73656714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117753200-117759000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:117753800-117762200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:117756200-117759600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:117756800-117759800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:117757200-117762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:117757800-117759000	Enhancers	Stomach Mucosa	stomach
7	chr9:117758200-117759800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:117758800-117759000	Enhancers	Primary B cells from cord blood	blood
9	chr9:117758800-117762200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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