Variant report

Variant	rs73656710
Chromosome Location	chr9:117755312-117755313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57839197	1.00[AMR][1000 genomes]
rs73656709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117749600-117757800	Weak transcription	Spleen	Spleen
2	chr9:117752200-117755800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117753000-117758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:117753200-117759000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:117753800-117762200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:117754600-117756200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:117754800-117756800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:117755000-117756800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:117755200-117755400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:117755200-117757200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links