Variant report

Variant	rs57855828
Chromosome Location	chr6:82196816-82196817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55765987	1.00[AFR][1000 genomes]
rs55853385	1.00[AFR][1000 genomes]
rs55896603	1.00[AFR][1000 genomes]
rs55908447	1.00[AFR][1000 genomes]
rs55941921	0.87[AFR][1000 genomes]
rs56307420	1.00[AFR][1000 genomes]
rs56395455	0.87[AFR][1000 genomes]
rs58497319	1.00[AFR][1000 genomes]
rs59174879	1.00[AFR][1000 genomes]
rs59374553	1.00[AFR][1000 genomes]
rs60451676	1.00[AFR][1000 genomes]
rs60862286	1.00[AFR][1000 genomes]
rs60903961	1.00[AFR][1000 genomes]
rs73749143	1.00[AFR][1000 genomes]
rs73749144	1.00[AFR][1000 genomes]
rs73749145	1.00[AFR][1000 genomes]
rs73749147	1.00[AFR][1000 genomes]
rs73749155	1.00[AFR][1000 genomes]
rs73749156	1.00[AFR][1000 genomes]
rs73749157	1.00[AFR][1000 genomes]
rs73749158	1.00[AFR][1000 genomes]
rs73749159	1.00[AFR][1000 genomes]
rs73749160	1.00[AFR][1000 genomes]
rs73749161	1.00[AFR][1000 genomes]
rs73749162	1.00[AFR][1000 genomes]
rs73749163	1.00[AFR][1000 genomes]
rs73749165	1.00[AFR][1000 genomes]
rs73749166	1.00[AFR][1000 genomes]
rs73749167	1.00[AFR][1000 genomes]
rs73749168	1.00[AFR][1000 genomes]
rs73749169	1.00[AFR][1000 genomes]
rs73749186	0.87[AFR][1000 genomes]
rs73749188	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82195000-82197000	Enhancers	Brain Angular Gyrus	brain
2	chr6:82195200-82197000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:82195200-82197200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:82196000-82197200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:82196200-82197400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:82196400-82197000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:82196600-82200200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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