Variant report
| Variant | rs73749188 |
|---|---|
| Chromosome Location | chr6:82244679-82244680 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | BATF | chr6:82244661-82244946 | GM12878 | blood: | n/a | n/a |
| 2 | STAT3 | chr6:82244157-82244739 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | EBF1 | chr6:82244607-82245664 | GM12878 | blood: | n/a | chr6:82245429-82245440 |
| 4 | RUNX3 | chr6:82244663-82245063 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226089 | TF binding region |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs55765987 | 0.87[AFR][1000 genomes] |
| rs55853385 | 0.87[AFR][1000 genomes] |
| rs55896603 | 0.87[AFR][1000 genomes] |
| rs55908447 | 0.87[AFR][1000 genomes] |
| rs55941921 | 1.00[AFR][1000 genomes] |
| rs56307420 | 0.87[AFR][1000 genomes] |
| rs56395455 | 1.00[AFR][1000 genomes] |
| rs57855828 | 0.87[AFR][1000 genomes] |
| rs58497319 | 0.87[AFR][1000 genomes] |
| rs59174879 | 0.87[AFR][1000 genomes] |
| rs59374553 | 0.87[AFR][1000 genomes] |
| rs60451676 | 0.87[AFR][1000 genomes] |
| rs60862286 | 0.87[AFR][1000 genomes] |
| rs60903961 | 0.87[AFR][1000 genomes] |
| rs73749143 | 0.87[AFR][1000 genomes] |
| rs73749144 | 0.87[AFR][1000 genomes] |
| rs73749145 | 0.87[AFR][1000 genomes] |
| rs73749147 | 0.87[AFR][1000 genomes] |
| rs73749155 | 0.87[AFR][1000 genomes] |
| rs73749156 | 0.87[AFR][1000 genomes] |
| rs73749157 | 0.87[AFR][1000 genomes] |
| rs73749158 | 0.87[AFR][1000 genomes] |
| rs73749159 | 0.87[AFR][1000 genomes] |
| rs73749160 | 0.87[AFR][1000 genomes] |
| rs73749161 | 0.87[AFR][1000 genomes] |
| rs73749162 | 0.87[AFR][1000 genomes] |
| rs73749163 | 0.87[AFR][1000 genomes] |
| rs73749165 | 0.87[AFR][1000 genomes] |
| rs73749166 | 0.87[AFR][1000 genomes] |
| rs73749167 | 0.87[AFR][1000 genomes] |
| rs73749168 | 0.87[AFR][1000 genomes] |
| rs73749169 | 0.87[AFR][1000 genomes] |
| rs73749186 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82242600-82245000 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr6:82244000-82259000 | Weak transcription | Placenta | Placenta |
