Variant report

Variant	rs73749157
Chromosome Location	chr6:82197574-82197575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55765987	1.00[AFR][1000 genomes]
rs55853385	1.00[AFR][1000 genomes]
rs55896603	1.00[AFR][1000 genomes]
rs55908447	1.00[AFR][1000 genomes]
rs55941921	0.87[AFR][1000 genomes]
rs56307420	1.00[AFR][1000 genomes]
rs56395455	0.87[AFR][1000 genomes]
rs57855828	1.00[AFR][1000 genomes]
rs58497319	1.00[AFR][1000 genomes]
rs59174879	1.00[AFR][1000 genomes]
rs59374553	1.00[AFR][1000 genomes]
rs60451676	1.00[AFR][1000 genomes]
rs60862286	1.00[AFR][1000 genomes]
rs60903961	1.00[AFR][1000 genomes]
rs73749143	1.00[AFR][1000 genomes]
rs73749144	1.00[AFR][1000 genomes]
rs73749145	1.00[AFR][1000 genomes]
rs73749147	1.00[AFR][1000 genomes]
rs73749155	1.00[AFR][1000 genomes]
rs73749156	1.00[AFR][1000 genomes]
rs73749158	1.00[AFR][1000 genomes]
rs73749159	1.00[AFR][1000 genomes]
rs73749160	1.00[AFR][1000 genomes]
rs73749161	1.00[AFR][1000 genomes]
rs73749162	1.00[AFR][1000 genomes]
rs73749163	1.00[AFR][1000 genomes]
rs73749165	1.00[AFR][1000 genomes]
rs73749166	1.00[AFR][1000 genomes]
rs73749167	1.00[AFR][1000 genomes]
rs73749168	1.00[AFR][1000 genomes]
rs73749169	1.00[AFR][1000 genomes]
rs73749186	0.87[AFR][1000 genomes]
rs73749188	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82196600-82200200	Weak transcription	Liver	Liver
2	chr6:82197000-82197600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:82197000-82197600	Active TSS	Brain Anterior Caudate	brain
4	chr6:82197000-82197600	Active TSS	Brain Hippocampus Middle	brain
5	chr6:82197000-82197600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:82197200-82197600	Active TSS	Aorta	Aorta
7	chr6:82197200-82197600	Active TSS	Brain Angular Gyrus	brain
8	chr6:82197200-82197600	Active TSS	Brain Cingulate Gyrus	brain
9	chr6:82197200-82197600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:82197200-82197600	Active TSS	Brain Substantia Nigra	brain
11	chr6:82197200-82197800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82197200-82197800	Active TSS	Fetal Brain Female	brain
13	chr6:82197200-82197800	Active TSS	Osteobl	bone
14	chr6:82197400-82197600	Enhancers	Ovary	ovary
15	chr6:82197400-82197800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:82197400-82197800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:82197400-82197800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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