Variant report

Variant	rs57865794
Chromosome Location	chr3:100297667-100297668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1165522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920936	1.00[EUR][1000 genomes]
rs11921235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305376	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305377	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305378	0.91[AMR][1000 genomes]
rs1676335	1.00[EUR][1000 genomes]
rs1676347	1.00[EUR][1000 genomes]
rs1676348	1.00[EUR][1000 genomes]
rs1718269	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718271	0.91[AMR][1000 genomes]
rs57295454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57518757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60148175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179072	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441369	1.00[EUR][1000 genomes]
rs667277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs688253	0.91[AMR][1000 genomes]
rs7431884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7431911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100265800-100300600	Weak transcription	HepG2	liver
3	chr3:100276800-100309200	Weak transcription	NH-A	brain
4	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:100277600-100304200	Weak transcription	Ovary	ovary
6	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:100281200-100300200	Weak transcription	Osteobl	bone
8	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
9	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:100283600-100298400	Weak transcription	HSMM	muscle
11	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:100288200-100298600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:100289400-100299400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:100289600-100300200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:100289600-100301000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:100289800-100298600	Weak transcription	Aorta	Aorta
17	chr3:100289800-100298800	Weak transcription	Fetal Lung	lung
18	chr3:100290200-100300000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:100294800-100297800	Enhancers	Liver	Liver
20	chr3:100295600-100298800	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr3:100296000-100298800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:100297200-100300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:100297400-100297800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:100297400-100300400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:100297600-100298400	Weak transcription	Pancreas	Pancrea
26	chr3:100297600-100298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:100297600-100303400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links