Variant report

Variant	rs6806901
Chromosome Location	chr3:100287704-100287705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1143777	1.00[TSI][hapmap]
rs1144104	1.00[TSI][hapmap]
rs1144110	1.00[TSI][hapmap]
rs1145350	1.00[MEX][hapmap]
rs1165522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920936	1.00[EUR][1000 genomes]
rs11921235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1300266	1.00[TSI][hapmap]
rs1305376	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305377	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305378	0.91[AMR][1000 genomes]
rs1676335	1.00[EUR][1000 genomes]
rs1676347	1.00[EUR][1000 genomes]
rs1676348	1.00[EUR][1000 genomes]
rs1680499	1.00[TSI][hapmap]
rs1718269	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718271	0.91[AMR][1000 genomes]
rs57295454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57518757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57865794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60148175	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441369	1.00[EUR][1000 genomes]
rs667277	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs688253	0.91[AMR][1000 genomes]
rs7431884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7431911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839721	1.00[MEX][hapmap]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:100253800-100289000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:100253800-100289000	Weak transcription	Aorta	Aorta
4	chr3:100265800-100300600	Weak transcription	HepG2	liver
5	chr3:100270800-100291000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:100273400-100288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:100273400-100297000	Weak transcription	Pancreas	Pancrea
8	chr3:100276800-100309200	Weak transcription	NH-A	brain
9	chr3:100277200-100298000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:100277600-100304200	Weak transcription	Ovary	ovary
11	chr3:100278200-100305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:100280800-100289000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:100281000-100287800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100281200-100300200	Weak transcription	Osteobl	bone
15	chr3:100281600-100289200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:100281800-100287800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:100282000-100291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:100282400-100287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:100282400-100296800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:100282600-100287800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:100282600-100289000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:100282800-100296800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:100283400-100298000	Weak transcription	HSMMtube	muscle
24	chr3:100283400-100300400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:100283600-100298400	Weak transcription	HSMM	muscle
26	chr3:100283800-100288600	Weak transcription	Fetal Stomach	stomach
27	chr3:100283800-100299800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:100284600-100290400	Weak transcription	Psoas Muscle	Psoas
29	chr3:100287200-100290200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:100287400-100290200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:100287600-100289800	Strong transcription	Fetal Lung	lung
32	chr3:100287600-100290200	Strong transcription	Liver	Liver

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