Variant report

Variant	rs11920936
Chromosome Location	chr3:100306914-100306915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1165522	1.00[EUR][1000 genomes]
rs11921235	1.00[EUR][1000 genomes]
rs1305376	1.00[EUR][1000 genomes]
rs1305377	1.00[EUR][1000 genomes]
rs1676335	1.00[EUR][1000 genomes]
rs1676347	1.00[EUR][1000 genomes]
rs1676348	1.00[EUR][1000 genomes]
rs1718269	1.00[EUR][1000 genomes]
rs57295454	1.00[EUR][1000 genomes]
rs57379878	1.00[EUR][1000 genomes]
rs57518757	1.00[EUR][1000 genomes]
rs57865794	1.00[EUR][1000 genomes]
rs60148175	1.00[EUR][1000 genomes]
rs61179072	1.00[EUR][1000 genomes]
rs6441369	1.00[EUR][1000 genomes]
rs667277	1.00[EUR][1000 genomes]
rs6806901	1.00[EUR][1000 genomes]
rs7431884	1.00[EUR][1000 genomes]
rs7431911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751965	chr3:100299310-100462527	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2751966	chr3:100299310-100468500	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2756284	chr3:100299329-100427937	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752830	chr3:100299329-100442478	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv432464	chr3:100299329-100442478	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2751967	chr3:100299329-100455139	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2751968	chr3:100299329-100476713	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv432466	chr3:100299329-100476713	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv3462224	chr3:100306645-100307173	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3529221	chr3:100306656-100307176	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3529224	chr3:100306657-100307164	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3462227	chr3:100306674-100307146	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3529223	chr3:100306676-100307104	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3462225	chr3:100306684-100307139	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3529225	chr3:100306695-100307123	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3462226	chr3:100306696-100307095	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3329326	chr3:100306715-100307093	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3462228	chr3:100306732-100307075	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3529222	chr3:100306741-100307090	Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3462229	chr3:100306748-100307083	Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3529226	chr3:100306748-100307083	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100276800-100309200	Weak transcription	NH-A	brain
2	chr3:100298600-100309000	Weak transcription	Pancreas	Pancrea
3	chr3:100300600-100309200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:100301600-100309000	Weak transcription	Osteobl	bone
5	chr3:100304200-100309200	Weak transcription	Fetal Stomach	stomach
6	chr3:100305000-100309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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