Variant report

Variant	rs57865832
Chromosome Location	chr3:54702669-54702670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72870607	1.00[AFR][1000 genomes]
rs72870668	1.00[AFR][1000 genomes]
rs72870684	1.00[AFR][1000 genomes]
rs72870700	1.00[AFR][1000 genomes]
rs72872241	1.00[AFR][1000 genomes]
rs72872252	1.00[AFR][1000 genomes]
rs72872301	1.00[AFR][1000 genomes]
rs72874223	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv525644	chr3:54653316-54709987	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54685200-54704000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:54691400-54704000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:54694000-54702800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:54695200-54703200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:54695400-54703800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:54695600-54704000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:54697400-54704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:54698400-54704200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:54698400-54704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:54699400-54704200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:54702200-54703000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:54702400-54702800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:54702400-54704000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:54702400-54706600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:54702600-54703000	Enhancers	Esophagus	oesophagus
16	chr3:54702600-54703000	Weak transcription	Fetal Stomach	stomach
17	chr3:54702600-54703400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:54702600-54704000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:54702600-54704200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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