Variant report

Variant	rs57872423
Chromosome Location	chr4:128950211-128950212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:128939253..128941780-chr4:128949291..128951540,2	K562	blood:
2	chr4:128943520..128946273-chr4:128949804..128951631,2	MCF-7	breast:
3	chr4:128945174..128947844-chr4:128948458..128951157,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11940642	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11942726	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944947	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16997978	0.81[EUR][1000 genomes]
rs17012727	0.81[EUR][1000 genomes]
rs17012743	0.81[EUR][1000 genomes]
rs17012747	0.81[EUR][1000 genomes]
rs17012750	0.81[EUR][1000 genomes]
rs17012788	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17012836	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012841	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012856	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012899	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007733	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2015987	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276898	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276899	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276900	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35763794	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3733319	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4426798	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4431238	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4470641	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535346	0.90[EUR][1000 genomes]
rs4607232	0.81[EUR][1000 genomes]
rs56250604	0.81[EUR][1000 genomes]
rs56699332	0.89[ASN][1000 genomes]
rs57257129	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57431280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57561160	0.81[EUR][1000 genomes]
rs57645489	0.81[EUR][1000 genomes]
rs58225850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58546713	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58569950	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59117993	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59189441	0.81[EUR][1000 genomes]
rs59569890	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59815828	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59984114	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60279389	0.81[EUR][1000 genomes]
rs60505265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60665827	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60930401	0.81[EUR][1000 genomes]
rs60979346	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61027047	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61300521	0.81[EUR][1000 genomes]
rs6817374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822340	0.84[ASN][1000 genomes]
rs6840241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6850549	0.81[EUR][1000 genomes]
rs6850726	0.81[EUR][1000 genomes]
rs72616963	0.81[EUR][1000 genomes]
rs72616965	0.81[EUR][1000 genomes]
rs72616966	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72616967	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72616968	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72616969	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72616970	0.81[EUR][1000 genomes]
rs72616971	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616972	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616973	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616974	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616975	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616976	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72616977	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72616978	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618806	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618807	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618808	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618809	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618810	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618811	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618812	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618813	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618814	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618815	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72618816	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72618817	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72618818	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618821	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618825	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618826	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618827	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72618828	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618829	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618830	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618831	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72618834	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618835	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128887600-128981200	Weak transcription	Psoas Muscle	Psoas
2	chr4:128887800-128951200	Weak transcription	HUVEC	blood vessel
3	chr4:128888400-128956000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:128890200-128950600	Weak transcription	HepG2	liver
5	chr4:128890400-128958600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:128893600-128954200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:128893600-128955800	Weak transcription	Right Ventricle	heart
8	chr4:128895800-128953600	Weak transcription	Pancreas	Pancrea
9	chr4:128896800-128951800	Weak transcription	HSMM	muscle
10	chr4:128912600-128950400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:128917400-128959000	Weak transcription	K562	blood
12	chr4:128918200-128954600	Weak transcription	Brain Angular Gyrus	brain
13	chr4:128924800-128954400	Weak transcription	Fetal Brain Male	brain
14	chr4:128926600-128954800	Weak transcription	Colonic Mucosa	Colon
15	chr4:128928000-128952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:128931000-128953200	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:128933000-128954800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:128934000-128954600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:128934200-128952800	Weak transcription	Gastric	stomach
20	chr4:128934400-128952000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:128934400-128963000	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:128935000-128950800	Weak transcription	Hela-S3	cervix
23	chr4:128935200-128956000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:128935600-128962400	Weak transcription	HMEC	breast
25	chr4:128936400-128952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:128938000-128954200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:128938200-128950600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr4:128938200-128953400	Strong transcription	Fetal Thymus	thymus
29	chr4:128938400-128951400	Strong transcription	Liver	Liver
30	chr4:128938400-128952200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:128938400-128953600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:128938800-128962000	Weak transcription	NH-A	brain
33	chr4:128939000-128953600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr4:128939200-128951400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:128940000-128959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:128941200-128951200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:128941400-128959000	Weak transcription	HSMMtube	muscle
38	chr4:128941800-128951000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:128941800-128952000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr4:128941800-128952600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:128941800-128955200	Weak transcription	Spleen	Spleen
42	chr4:128941800-128962600	Weak transcription	Small Intestine	intestine
43	chr4:128941800-128963000	Weak transcription	Fetal Kidney	kidney
44	chr4:128942000-128950400	Weak transcription	Aorta	Aorta
45	chr4:128942000-128952000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:128942200-128950600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:128942400-128955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:128942600-128951000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:128943200-128953600	Weak transcription	NHDF-Ad	bronchial
50	chr4:128943600-128952200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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