Variant report

Variant	rs72618824
Chromosome Location	chr4:128956440-128956441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11940642	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11942726	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944947	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16997978	0.81[EUR][1000 genomes]
rs17012727	0.81[EUR][1000 genomes]
rs17012743	0.81[EUR][1000 genomes]
rs17012747	0.81[EUR][1000 genomes]
rs17012750	0.81[EUR][1000 genomes]
rs17012788	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17012836	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012841	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012856	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012870	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012899	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007733	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2015987	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276898	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276899	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276900	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35763794	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3733319	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4426798	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4431238	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4470641	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535346	0.90[EUR][1000 genomes]
rs4607232	0.81[EUR][1000 genomes]
rs56250604	0.81[EUR][1000 genomes]
rs56699332	0.89[ASN][1000 genomes]
rs57257129	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57431280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57487637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57561160	0.81[EUR][1000 genomes]
rs57645489	0.81[EUR][1000 genomes]
rs57872423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58225850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58546713	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58569950	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59117993	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59189441	0.81[EUR][1000 genomes]
rs59569890	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59815828	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59984114	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60279389	0.81[EUR][1000 genomes]
rs60505265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60665827	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60930401	0.81[EUR][1000 genomes]
rs60979346	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61027047	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61300521	0.81[EUR][1000 genomes]
rs6817374	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822340	0.84[ASN][1000 genomes]
rs6840241	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6850549	0.81[EUR][1000 genomes]
rs6850726	0.81[EUR][1000 genomes]
rs72616963	0.81[EUR][1000 genomes]
rs72616965	0.81[EUR][1000 genomes]
rs72616966	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72616967	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72616968	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72616969	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72616970	0.81[EUR][1000 genomes]
rs72616971	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72616972	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616973	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616974	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616975	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72616976	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72616977	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72616978	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618806	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618807	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618808	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618809	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618810	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618811	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618812	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618813	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618814	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618815	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72618816	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72618817	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72618818	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618821	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618825	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72618826	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72618828	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618829	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618830	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618831	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72618834	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618835	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	esv1800378	chr4:128954647-128986874	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	esv1801389	chr4:128954647-128986874	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	esv1802601	chr4:128954647-128986874	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128887600-128981200	Weak transcription	Psoas Muscle	Psoas
2	chr4:128890400-128958600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:128917400-128959000	Weak transcription	K562	blood
4	chr4:128934400-128963000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:128935600-128962400	Weak transcription	HMEC	breast
6	chr4:128938800-128962000	Weak transcription	NH-A	brain
7	chr4:128940000-128959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:128941400-128959000	Weak transcription	HSMMtube	muscle
9	chr4:128941800-128962600	Weak transcription	Small Intestine	intestine
10	chr4:128941800-128963000	Weak transcription	Fetal Kidney	kidney
11	chr4:128945600-128959000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:128945600-128961800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:128947000-128963000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:128948000-128962800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:128948600-128959000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:128950400-128960400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:128950600-128958400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:128950600-128959200	Weak transcription	Osteobl	bone
19	chr4:128950600-128959400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:128951200-128957200	Weak transcription	Left Ventricle	heart
21	chr4:128951200-128960200	Weak transcription	Fetal Stomach	stomach
22	chr4:128951200-128961400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:128951400-128959200	Weak transcription	Thymus	Thymus
24	chr4:128951400-128960200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:128951400-128963800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:128951400-128981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:128951600-128958600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:128951800-128957600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:128951800-128962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:128952000-128958000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:128952000-128958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:128952000-128958400	Weak transcription	Adipose Nuclei	Adipose
33	chr4:128952000-128959200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:128952000-128962400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:128952200-128957000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:128952200-128957200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:128952200-128958200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:128952200-128958200	Weak transcription	Fetal Intestine Large	intestine
39	chr4:128952200-128958400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:128952200-128962400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:128952200-128962600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:128952200-128962800	Weak transcription	Primary B cells from cord blood	blood
43	chr4:128952200-128962800	Weak transcription	HSMM	muscle
44	chr4:128952400-128958400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:128953200-128958400	Weak transcription	Primary T cells from cord blood	blood
46	chr4:128953400-128963200	Weak transcription	Fetal Thymus	thymus
47	chr4:128953600-128959400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:128953600-128962800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:128953800-128957000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:128953800-128963600	Weak transcription	Fetal Muscle Leg	muscle

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