Variant report

Variant	rs57873211
Chromosome Location	chr17:38192757-38192758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:38192668-38192827	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38191841..38193533-chr17:38193734..38195685,2	K562	blood:
2	chr17:38183240..38186698-chr17:38191393..38193112,3	MCF-7	breast:
3	chr17:38191456..38193795-chr17:38198203..38200454,3	K562	blood:
4	chr17:38191625..38193945-chr17:38255640..38257411,2	MCF-7	breast:
5	chr17:38189937..38192774-chr17:38333499..38335289,2	MCF-7	breast:
6	chr17:38191590..38193239-chr17:38198597..38200448,2	K562	blood:

No data

Variant related genes	Relation type
MED24	TF binding region
ENSG00000108352	Chromatin interaction
ENSG00000126368	Chromatin interaction
ENSG00000238793	Chromatin interaction
ENSG00000008838	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11652972	0.87[AFR][1000 genomes]
rs34556339	0.96[AFR][1000 genomes]
rs71371404	0.87[AFR][1000 genomes]
rs71371407	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38173400-38192800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:38174000-38193800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:38174400-38193200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr17:38175000-38193800	Strong transcription	HepG2	liver
5	chr17:38175200-38193200	Strong transcription	Dnd41	blood
6	chr17:38175600-38193200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr17:38175600-38193200	Strong transcription	Brain Cingulate Gyrus	brain
8	chr17:38175600-38193800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:38176000-38195400	Weak transcription	Right Atrium	heart
10	chr17:38176200-38193800	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr17:38180400-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:38181400-38193200	Strong transcription	Brain Substantia Nigra	brain
13	chr17:38181400-38193400	Strong transcription	Brain Anterior Caudate	brain
14	chr17:38182800-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:38183000-38195600	Strong transcription	Primary T cells from cord blood	blood
16	chr17:38183200-38193800	Strong transcription	Thymus	Thymus
17	chr17:38183400-38193200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:38183600-38192800	Strong transcription	Fetal Intestine Small	intestine
19	chr17:38183600-38193200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr17:38183600-38193400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr17:38183600-38193800	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr17:38183800-38193200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr17:38183800-38193200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:38183800-38193600	Strong transcription	K562	blood
25	chr17:38183800-38194400	Strong transcription	Placenta	Placenta
26	chr17:38183800-38195000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr17:38183800-38195600	Strong transcription	Fetal Thymus	thymus
28	chr17:38184400-38193200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr17:38184800-38192800	Strong transcription	Ovary	ovary
30	chr17:38184800-38193200	Strong transcription	Fetal Kidney	kidney
31	chr17:38186600-38209800	Weak transcription	Small Intestine	intestine
32	chr17:38187000-38193400	Strong transcription	Primary B cells from cord blood	blood
33	chr17:38188800-38209400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr17:38189200-38193800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr17:38189600-38193200	Strong transcription	Liver	Liver
36	chr17:38189600-38194600	Weak transcription	NH-A	brain
37	chr17:38189600-38195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr17:38189600-38195000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr17:38189600-38206600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr17:38189600-38209600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr17:38189600-38209600	Weak transcription	Psoas Muscle	Psoas
42	chr17:38189800-38193200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr17:38189800-38195000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr17:38189800-38195000	Weak transcription	HUVEC	blood vessel
45	chr17:38190600-38209600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr17:38191000-38195400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr17:38191000-38208800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:38191200-38193200	Weak transcription	Stomach Mucosa	stomach
49	chr17:38191400-38194600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr17:38191400-38201000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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