Variant report

Variant	rs34556339
Chromosome Location	chr17:38189745-38189746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:38188992-38189777	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38189430..38192064-chr17:38296302..38298504,2	MCF-7	breast:
2	chr17:38188602..38190151-chr17:38209862..38212008,2	MCF-7	breast:

Variant related genes	Relation type
MED24	TF binding region
ENSG00000108349	Chromatin interaction
ENSG00000008838	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11652972	0.91[AFR][1000 genomes]
rs12941675	0.82[AFR][1000 genomes]
rs34029479	0.82[AFR][1000 genomes]
rs36026011	0.82[AFR][1000 genomes]
rs57873211	0.96[AFR][1000 genomes]
rs71371404	0.91[AFR][1000 genomes]
rs71371407	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38173400-38192800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:38174000-38192600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr17:38174000-38193800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:38174400-38193200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr17:38174800-38192600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr17:38175000-38193800	Strong transcription	HepG2	liver
7	chr17:38175200-38192600	Strong transcription	Fetal Brain Female	brain
8	chr17:38175200-38193200	Strong transcription	Dnd41	blood
9	chr17:38175600-38191400	Strong transcription	Brain Hippocampus Middle	brain
10	chr17:38175600-38193200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr17:38175600-38193200	Strong transcription	Brain Cingulate Gyrus	brain
12	chr17:38175600-38193800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:38175800-38192600	Strong transcription	Brain Germinal Matrix	brain
14	chr17:38176000-38189800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr17:38176000-38192600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:38176000-38195400	Weak transcription	Right Atrium	heart
17	chr17:38176200-38193800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:38176400-38192400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr17:38177800-38191000	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr17:38178200-38192600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr17:38178600-38191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:38179000-38192600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr17:38180400-38191200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr17:38180400-38192600	Strong transcription	Fetal Intestine Large	intestine
25	chr17:38180400-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:38181000-38192600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr17:38181400-38192600	Strong transcription	Fetal Lung	lung
28	chr17:38181400-38193200	Strong transcription	Brain Substantia Nigra	brain
29	chr17:38181400-38193400	Strong transcription	Brain Anterior Caudate	brain
30	chr17:38181800-38192600	Strong transcription	Osteobl	bone
31	chr17:38182800-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:38183000-38195600	Strong transcription	Primary T cells from cord blood	blood
33	chr17:38183200-38193800	Strong transcription	Thymus	Thymus
34	chr17:38183400-38190800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr17:38183400-38191000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:38183400-38192400	Strong transcription	Adipose Nuclei	Adipose
37	chr17:38183400-38192600	Strong transcription	NHLF	lung
38	chr17:38183400-38193200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr17:38183600-38191400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr17:38183600-38191600	Strong transcription	A549	lung
41	chr17:38183600-38192200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr17:38183600-38192200	Strong transcription	Esophagus	oesophagus
43	chr17:38183600-38192600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr17:38183600-38192800	Strong transcription	Fetal Intestine Small	intestine
45	chr17:38183600-38193200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:38183600-38193400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr17:38183600-38193800	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr17:38183800-38191200	Strong transcription	Fetal Muscle Leg	muscle
49	chr17:38183800-38192600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr17:38183800-38192600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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