Variant report

Variant	rs36026011
Chromosome Location	chr17:38184700-38184701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38178740..38181888-chr17:38181920..38184770,3	K562	blood:
2	chr17:38177803..38180808-chr17:38181920..38184987,3	K562	blood:
3	chr17:38181641..38185122-chr17:38333882..38336606,4	MCF-7	breast:
4	chr17:38175295..38180645-chr17:38181007..38185256,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108352	Chromatin interaction
ENSG00000008838	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11655821	0.85[AFR][1000 genomes]
rs12941675	0.92[AFR][1000 genomes]
rs2227318	0.88[AFR][1000 genomes]
rs34029479	0.92[AFR][1000 genomes]
rs34556339	0.82[AFR][1000 genomes]
rs34616965	0.88[AFR][1000 genomes]
rs34622957	0.85[AFR][1000 genomes]
rs71371403	0.88[AFR][1000 genomes]
rs71371407	0.90[AFR][1000 genomes]
rs7211771	0.88[AFR][1000 genomes]
rs8068498	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38171400-38186000	Weak transcription	Small Intestine	intestine
2	chr17:38173400-38192800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:38174000-38192600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr17:38174000-38193800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:38174200-38187400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:38174400-38193200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr17:38174800-38192600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:38175000-38193800	Strong transcription	HepG2	liver
9	chr17:38175200-38192600	Strong transcription	Fetal Brain Female	brain
10	chr17:38175200-38193200	Strong transcription	Dnd41	blood
11	chr17:38175400-38188200	Weak transcription	Fetal Heart	heart
12	chr17:38175600-38191400	Strong transcription	Brain Hippocampus Middle	brain
13	chr17:38175600-38193200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:38175600-38193200	Strong transcription	Brain Cingulate Gyrus	brain
15	chr17:38175600-38193800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:38175800-38192600	Strong transcription	Brain Germinal Matrix	brain
17	chr17:38176000-38189800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr17:38176000-38192600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:38176000-38195400	Weak transcription	Right Atrium	heart
20	chr17:38176200-38193800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr17:38176400-38192400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:38177800-38185400	Strong transcription	GM12878-XiMat	blood
23	chr17:38177800-38191000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr17:38178000-38187800	Strong transcription	Right Ventricle	heart
25	chr17:38178200-38192600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr17:38178600-38191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:38179000-38192600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr17:38180400-38191200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr17:38180400-38192600	Strong transcription	Fetal Intestine Large	intestine
30	chr17:38180400-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr17:38181000-38192600	Strong transcription	Primary hematopoietic stem cells	blood
32	chr17:38181400-38192600	Strong transcription	Fetal Lung	lung
33	chr17:38181400-38193200	Strong transcription	Brain Substantia Nigra	brain
34	chr17:38181400-38193400	Strong transcription	Brain Anterior Caudate	brain
35	chr17:38181800-38192600	Strong transcription	Osteobl	bone
36	chr17:38182400-38187800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr17:38182600-38187200	Weak transcription	NHDF-Ad	bronchial
38	chr17:38182800-38184800	Weak transcription	Brain Angular Gyrus	brain
39	chr17:38182800-38193800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr17:38183000-38184800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr17:38183000-38184800	Weak transcription	Fetal Kidney	kidney
42	chr17:38183000-38184800	Weak transcription	Ovary	ovary
43	chr17:38183000-38185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr17:38183000-38188800	Weak transcription	Fetal Brain Male	brain
45	chr17:38183000-38195600	Strong transcription	Primary T cells from cord blood	blood
46	chr17:38183200-38185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr17:38183200-38193800	Strong transcription	Thymus	Thymus
48	chr17:38183400-38184800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr17:38183400-38184800	Weak transcription	Stomach Mucosa	stomach
50	chr17:38183400-38185200	Weak transcription	Rectal Smooth Muscle	rectum

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