Variant report

Variant	rs34622957
Chromosome Location	chr17:38158182-38158183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11652972	0.82[AFR][1000 genomes]
rs11655821	0.92[AFR][1000 genomes]
rs12941675	0.92[AFR][1000 genomes]
rs2227318	0.96[AFR][1000 genomes]
rs34029479	0.92[AFR][1000 genomes]
rs34616965	0.96[AFR][1000 genomes]
rs36026011	0.85[AFR][1000 genomes]
rs71371403	0.96[AFR][1000 genomes]
rs71371404	0.82[AFR][1000 genomes]
rs71371407	0.83[AFR][1000 genomes]
rs7211771	0.96[AFR][1000 genomes]
rs8068498	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3315283	chr17:38157576-38158443	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3315284	chr17:38157576-38158443	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
2	chr17:38152200-38160800	Weak transcription	K562	blood
3	chr17:38153200-38158400	Weak transcription	Fetal Kidney	kidney
4	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
5	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
8	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
9	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:38154200-38161000	Weak transcription	Lung	lung
14	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:38154400-38158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr17:38154400-38158800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr17:38154400-38160400	Weak transcription	HepG2	liver
18	chr17:38154400-38166200	Weak transcription	Dnd41	blood
19	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr17:38154600-38160800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr17:38154600-38166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr17:38154600-38166400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:38154600-38170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:38154600-38170200	Weak transcription	Esophagus	oesophagus
25	chr17:38154800-38158800	Weak transcription	Fetal Intestine Small	intestine
26	chr17:38154800-38159200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr17:38154800-38173600	Weak transcription	Thymus	Thymus
28	chr17:38155000-38158400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr17:38155000-38158800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr17:38155000-38158800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr17:38155000-38160600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:38155000-38160600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr17:38155000-38166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:38155000-38166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:38155000-38170000	Weak transcription	HSMM	muscle
36	chr17:38155000-38173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr17:38155000-38174000	Weak transcription	Fetal Brain Female	brain
38	chr17:38155400-38170200	Weak transcription	Placenta	Placenta
39	chr17:38155600-38164200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr17:38155600-38166600	Weak transcription	Fetal Thymus	thymus
41	chr17:38155600-38169600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr17:38155600-38169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:38155800-38160400	Weak transcription	Fetal Muscle Leg	muscle
44	chr17:38155800-38161000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr17:38155800-38171800	Weak transcription	Spleen	Spleen

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