Variant report

Variant	rs7211771
Chromosome Location	chr17:38165784-38165785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11652972	0.86[AFR][1000 genomes]
rs11655821	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs12941675	0.96[AFR][1000 genomes]
rs2227318	1.00[AFR][1000 genomes]
rs34029479	0.96[AFR][1000 genomes]
rs34616965	1.00[AFR][1000 genomes]
rs34622957	0.96[AFR][1000 genomes]
rs36026011	0.88[AFR][1000 genomes]
rs71371403	1.00[AFR][1000 genomes]
rs71371404	0.86[AFR][1000 genomes]
rs71371407	0.86[AFR][1000 genomes]
rs8068498	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
2	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:38154400-38166200	Weak transcription	Dnd41	blood
9	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr17:38154600-38166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:38154600-38166400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:38154600-38170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:38154600-38170200	Weak transcription	Esophagus	oesophagus
14	chr17:38154800-38173600	Weak transcription	Thymus	Thymus
15	chr17:38155000-38166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr17:38155000-38166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:38155000-38170000	Weak transcription	HSMM	muscle
18	chr17:38155000-38173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:38155000-38174000	Weak transcription	Fetal Brain Female	brain
20	chr17:38155400-38170200	Weak transcription	Placenta	Placenta
21	chr17:38155600-38166600	Weak transcription	Fetal Thymus	thymus
22	chr17:38155600-38169600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr17:38155600-38169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr17:38155800-38171800	Weak transcription	Spleen	Spleen
25	chr17:38161000-38166400	Weak transcription	Stomach Mucosa	stomach
26	chr17:38164600-38171600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr17:38165200-38169800	Weak transcription	K562	blood
28	chr17:38165400-38166600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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