The 2.0 version of rSNPBase

Variant report

Variant rs11655821
Chromosome Location chr17:38169694-38169695
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38153800-38172200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr17:38154600-38170000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr17:38154600-38170200 Weak transcription Esophagus oesophagus
4 chr17:38154800-38173600 Weak transcription Thymus Thymus
5 chr17:38155000-38170000 Weak transcription HSMM muscle
6 chr17:38155000-38173600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr17:38155000-38174000 Weak transcription Fetal Brain Female brain
8 chr17:38155400-38170200 Weak transcription Placenta Placenta
9 chr17:38155600-38169800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr17:38155800-38171800 Weak transcription Spleen Spleen
11 chr17:38164600-38171600 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr17:38165200-38169800 Weak transcription K562 blood
13 chr17:38166800-38169800 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr17:38166800-38169800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr17:38166800-38169800 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr17:38166800-38169800 Weak transcription Fetal Lung lung
17 chr17:38166800-38169800 Weak transcription Dnd41 blood
18 chr17:38166800-38170000 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr17:38166800-38173400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr17:38166800-38173800 Weak transcription Primary T cells from cord blood blood
21 chr17:38166800-38174600 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr17:38166800-38177400 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr17:38166800-38178200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr17:38166800-38181600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr17:38167000-38174800 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr17:38167600-38170200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr17:38169000-38170000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
28 chr17:38169000-38170200 Weak transcription Rectal Smooth Muscle rectum
29 chr17:38169000-38171400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr17:38169200-38170000 Enhancers Brain Angular Gyrus brain
31 chr17:38169200-38172400 Enhancers NHEK skin
32 chr17:38169400-38169800 Weak transcription Brain Cingulate Gyrus brain
33 chr17:38169400-38170400 Enhancers Primary Natural Killer cells fromperipheralblood blood
34 chr17:38169400-38171800 Enhancers HMEC breast
35 chr17:38169600-38169800 Enhancers Muscle Satellite Cultured Cells --
36 chr17:38169600-38170000 ZNF genes & repeats Fetal Thymus thymus
37 chr17:38169600-38170400 Enhancers Primary T killer naive cells fromperipheralblood blood
38 chr17:38169600-38171600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr17:38169600-38172400 Enhancers Stomach Mucosa stomach
40 chr17:38169600-38172600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr17:38169600-38173200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr17:38169600-38175000 Enhancers Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015